Sage Bionetworks

Institute for Systems Biology

CRI Immune Atlas: Platform for immune-oncology research and data sharing phase 2 and 3. Exceptional Longevity Data Management and Coordinating Center, design and perform cross-project analysis focused on harnessing systems biology-based techniques, such as multi-omic data integration, network analysis, machine learning, and statistical modeling, to investigate both aging and disease, as well as the interplay between them.

• 2022

University of North Carolina at Chapel Hill

CRI Immune Atlas: Platform for immune-oncology research and data sharing phase 2 and 3. Defining regression models and validation methods for use in implementing statistical learning models for biomarker development in iAtlas. Add comprehensive tumor antigen prediction from multiple genomic sources to iAtlas datasets. Harmonize and curate data from additional IO clinical trials with genomic data for analysis using the IO response module.

• 2022

University of Washington

Partner to prototype and test best ways to build a Global Mental Health Databank that holds rich longitudinal data at scale from different global locations on approaches, treatments and interventions potentially relevant to anxiety or depression in 14-24 year olds.

• 2022

University of California Los Angeles

Lead evaluation and testing of new Synapse features and their incorporation into multiple challenges, including a lead study of prostate cancer Active Surveillance. Provide strategic advice, feature-testing and development, usage-scenarios and intensive testing.

• 2022

Memorial Sloan Kettering Cancer Center

Perform all work related to the proposed BRCA Pre-Cancer Atlas instance of the cBioPortal for Cancer Genomics. Build, maintain and run automated pipelines that transfer data from Synapse into BRCA Pre-Cancer Atlas Data Portal. Maintain all user logins and develop new Data Portal and cBioPortal features as they become relevant for the project. Provide user support, documentation, and outreach for the entire BRCA Pre Cancer Atlas.

• 2022

Duke University

Phase 1 and 2: RECOVER Mobile Health Platform/Mobile Health Repositories Working Group: Develop process for MHP to collect PASC related mobile health data from participants and share this data with MHDR to clean curate, conduct QA/QC, store and provide access to researchers. Customization of the mobile health platform, implementation of mobile data collection among the various studies, as well as, the storing, curation, linkage, and analyses of the mobile health data.

• 2022

Seven Bridges Genomics Inc

Exceptional Longevity Data Management and Coordinating Center, develop integration between Sage's data sharing portal, Synapse, and CABATICA.

• 2022

Harvard University Medical School

Multi-Consortia Coordinating Center (MC2 Center) for Cancer Biology: Building Interdisciplinary Scientific Communities, Coordinating Impactful Resource Sharing, and Advancing Cancer Research.

• 2022

Translational Genomics Research Institute

Exceptional Longevity Data Management and Coordinating Center, develop analytical methods for accommodating and exploring heterogeneity in large aggregated databases. They will also apply these methods with the other invetigators as well as researchers associated with the consortia that generated the aggregated data.

• 2022

The Pennsylvania State University

Phase 1 and 2: RECOVER Mobile Health Platform/Mobile Health Repositories Working Group: Develop process for MHP to collect PASC related mobile health data from participants and share this data with MHDR to clean curate, conduct QA/QC, store and provide access to researchers. Customization of the mobile health platform, implementation of mobile data collection among the various studies, as well as, the storing, curation, linkage, and analyses of the mobile health data.

• 2022